identifier	taxonID	type	CVterm	format	language	title	description	additionalInformationURL	UsageTerms	rights	Owner	contributor	creator	bibliographicCitation
03CD521DFFED8178FF1B4B45FEAF83B3.text	03CD521DFFED8178FF1B4B45FEAF83B3.taxon	http://purl.org/dc/dcmitype/Text	http://rs.tdwg.org/ontology/voc/SPMInfoItems#GeneralDescription	text/html	en	Simulium reptans (Linnaeus 1758)	<html xmlns:mods="http://www.loc.gov/mods/v3">
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            <p> Testing of the allele-specific PCR (AS-PCR) method for identification of  Simulium reptans and  S. reptantoides</p>
            <p> From examined 122 specimens, the vast majority (121) had a PCR product predicted for  S. reptans . One specimen had an additional band expected for  S. reptantoides . Subsequent sequencing of the COI region revealed a nucleotide substitution near the 3’ end of the corresponding primer annealing site (Figure 5). Despite the absence of  S. reptantoides among the studied specimens, the spectrum of PCR products of the individual with an additional substitution characteristic of  S. reptantoides indicates the possibility of differentiating these species using the proposed approach. </p>
            <p>Sequencing of nuclear rRNA genes</p>
            <p>Sequencing of a fragment of the COI gene and two regions of rRNA genes–ITS2 and the D 2 28S variable region –was performed for several individuals of each sample. Minimal polymorphism was detected for both rDNA sequences. In a number of specimens, polymorphism in ITS2 is expressed in the presence of several variants that differ in insertion/deletion, which makes it difficult to obtain complete reads.</p>
            <p>In addition to insertions/deletions, polymorphism was noted for the A/T substitution near the 3’ end of the sequence, as well as the overlap of these nucleotides (Figure 6). All three sequence variants occur in Asian populations; the variant with A/T overlap was noted in all 4 studied ITS2 sequences from the samples collected in the Murmansk Region.</p>
            <p> Most of the studied specimens were identical for the D 2 28S region; two sequences originating from Ust`-Kut (Irkutsk Region) and the Novosibirsk Region had a superposition of two nucleotides at the same position. The D 2 28S region sequences also differ in three positions from the sequence EF417075, presented in the DNA database and referred to  S. reptans . This result may be associated either with the peculiarities of species identification or with the presence of cryptic species. </p>
            <p>Phylogenetic analysis by COI gene region</p>
            <p> Despite the contradiction of data on restriction analysis and the results of species diagnostic PCR, all the studied sequences belonged to  S. reptans (Figure 7). Several groups of COI sequences uniting samples by geographical origin can be distinguished. Specimens of  S. reptans A include a basal group of British specimens, as well as a group including specimens from Sweden and from the Murmansk Region of Russia. Form B of  S. reptans includes the East European branch (Slovakia, Slovenia, Latvia, Lithuania); the Eurasian branch, with a very wide distribution from Northern Europe to Eastern Siberia (Great Britain, Sweden, Norway, part of the Siberian samples) and the Asian branch (Novosibirsk Region, Krasnoyarsk Krai, Irkutsk Region, Northern Kazakhstan). </p>
            <p>The Eurasian branch corresponds to the BstF5 I restriction spectrum of 100+250+350 bp. and Alu I restriction spectrum–with one detectable fragment of 230 bp in size.</p>
            <p>The Asian branch corresponds to the BstF5 I restriction spectrum of 600+100 bp. and Alu I restriction spectrum with fragments of 180+230 bp in size.</p>
            <p>Thus, the Asian branch predominates in the Ob-Irtysh basin (Novosibirsk Region, Krasnoyarsk Krai and Northern Kazakhstan), while in the Irkutsk Region the proportions of the Asian and Eurasian branches were comparable (Table S3, Figure 3).</p>
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	https://treatment.plazi.org/id/03CD521DFFED8178FF1B4B45FEAF83B3	Public Domain	No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.		MagnoliaPress via Plazi	Vaulin, Oleg V.;Petrozhitskaya, Liudmila V.;Novgorodova, Tatiana A.	Vaulin, Oleg V., Petrozhitskaya, Liudmila V., Novgorodova, Tatiana A. (2024): Genetic diversity of populations of Simulium reptans s. l. (Diptera: Simuliidae) in the territory of Russia and Northern Kazakhstan. Zootaxa 5543 (3): 329-342, DOI: 10.11646/zootaxa.5543.3.2, URL: https://doi.org/10.11646/zootaxa.5543.3.2
03CD521DFFEF8176FF1B4A50FBF08438.text	03CD521DFFEF8176FF1B4A50FBF08438.taxon	http://purl.org/dc/dcmitype/Text	http://rs.tdwg.org/ontology/voc/SPMInfoItems#GeneralDescription	text/html	en	Simulium reptans (Linnaeus 1758)	<html xmlns:mods="http://www.loc.gov/mods/v3">
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            <p> The features of the genetic structure of population of black flies of the  Simulium reptans s.l.</p>
            <p> Our results, information from other researchers (Kúdela et al. 2014; Đuknić 2023) and the DNA database indicate significant spatial heterogeneity in the distribution of  S. reptans .  The S. reptans A form is distributed relatively locally in  northern Europe. The S. reptans B form is widespread throughout  Eurasia : from the  British Isles to  Eastern Siberia and  Northern Kazakhstan.  Based on the sequence of the standard fragment of the COI gene for  S. reptans B, three branches can be distinguished—  Eastern European (Slovakia, Slovenia, Latvia, Lithuania),  Eurasian (general for  Northern European and  Asian habitats) and  Asian (  Western and  Eastern Siberia ,  Northern Kazakhstan).  The expected restriction spectra of the COI gene fragment by the BstF5 I enzyme differ between the  Eurasian (100+250+350 bp) and  Asian (600+100 bp) branches of  S. reptans B. Accordingly , based on the frequencies of these variants (Figure 4), it is possible to estimate the predominant mtDNA variants in populations.  
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Eastern Siberia (Ust`-  Kut ), both variants occur with similar frequencies (55 and 45%, respectively), while in the  Ob-Irtysh basin (  Novosibirsk region ,  Krasnoyarsk region and  Pavlodar region of Kazakhstan), the  Asian branch of mtDNA predominates (88%).  Consequently ,  S. reptans B populations show heterogeneity.  Branches within  S. reptans B differ in this DNA region by few nucleotide substitutions.  The Asian branch differs from the  Eurasian branch by two substitutions, and each of them differs from the  East European branch by three.  These distances are comparable to the degree of divergence between the A and B forms of  S. reptans .  The distance between the nearest tree nodes belonging to  S. reptans A and B is only three substitutions.  Of particular interest is the actual relationship between forms A and B of  S. reptans .  Are these forms reproductively isolated, having their own gene pools and ecological niches, i.e., are they cryptic species?  Or is mtDNA divergence just a peculiar variant of neutral intraspecific genetic diversity?  An indication of genomic divergence between forms A and B could be divergence of nuclear DNA markers. Sequences of fragments of nuclear rRNA genes with minimal polymorphism do not demonstrate subdivision between A and B forms. Thus, according to ITS2, the samples of  S. reptans A had the same nucleotide sequence as some of the individuals of  S. reptans B. According to D 2 28S, only two Asian individuals had variability in the form of superposition in a single position of sequence. The absence of differences in rRNA gene fragments between the studied branches A and B of  S. reptans does not confirm the hypothesis about the divergence of the genomes of A and B forms. It is most likely that these forms are only neutral genetic variants of mtDNA that do not mark separate, reproductively isolated groups of varying degrees. However, in order to clarify the relationships between these forms, it is necessary to conduct additional detailed studies, including an extensive multilocus analysis covering many regions of the genome and carried out for localities where the A and B forms of  S. reptans exist sympatrically. </p>
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                <a title="Search Plazi for locations around (long 30.0/lat 69.0)" href="https://tb.plazi.org/GgServer/search?materialsCitation.longitude=30.0&amp;materialsCitation.latitude=69.0">The</a>
                 habitats of forms A and B of  S. reptans are well defined.  
                <a title="Search Plazi for locations around (long 30.0/lat 69.0)" href="https://tb.plazi.org/GgServer/search?materialsCitation.longitude=30.0&amp;materialsCitation.latitude=69.0">The</a>
                 features of their distribution can be explained by the difficulties of expansion/mixing of conspecific individuals with different mtDNA variants.  
                <a title="Search Plazi for locations around (long 30.0/lat 69.0)" href="https://tb.plazi.org/GgServer/search?materialsCitation.longitude=30.0&amp;materialsCitation.latitude=69.0">At</a>
                 the same time, another possible explanation could be the actual genetic isolation of forms A and B and their adaptation to different environmental conditions.  
                <a title="Search Plazi for locations around (long 30.0/lat 69.0)" href="https://tb.plazi.org/GgServer/search?materialsCitation.longitude=30.0&amp;materialsCitation.latitude=69.0">Thus</a>
                 ,  S. reptans A is found in small and medium-sized rivers in northern Europe –from Great Britain to the northeast of the European part of Russia, which is within the boundaries of 54– 69°N and 2– 30°E, in conditions from subarctic to temperate continental climate of wet type, with an average annual precipitation of 500–600 mm, mainly on hilly plains and low mountains (50–250 m above sea level) with forest vegetation.  Simulium reptans B is distributed much more widely, mainly on flat, less often low-mountain, forest and steppe landscapes, with a temperate to sharply continental climate, with an annual precipitation of 300–500 mm. The development of  S. reptans B occurs in both large, medium and small rivers. 
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            <p> Unfortunately, we were not able to study material from mid-mountain forest landscapes of Siberia, which somewhat limits the possibilities of comparative analysis with European data on  Simulium reptans s.l. Due to the lack of information from the mountainous regions of Southwestern Europe, Siberia and Northern China, it is currently impossible to evaluate borders of distribution of forms of  S. reptans A and B, taking into account elevational zonation. Provided that the mitochondrial DNA variants corresponding to the A and B forms of  S. reptans mark reproductively isolated and ecologically isolated groups, one would expect that limited populations of  Simulium reptans A could be found on the upper border of the middle mountains, by analogy with the zonal foresttundra. </p>
            <p> At this stage of the study, the black fly  Simulium reptantoides was not found in the territory of Russia and Northern Kazakhstan. However, it is too early to make conclusions about the pattern of distribution of this species. According to Kúdela et al. (2014), the range of  S. reptantoides is not limited to Europe. To obtain a more complete understanding of the distribution of this species and answer the question of whether  S. reptantoides is present in the Asian part of Eurasia, additional studies, including areas with mountain taiga landscapes, are required. </p>
            <p> According to Adler (2022), the southern part of the range of  S. reptans covers Greece, Italy, Portugal, Spain, Tunisia, Turkey, Uzbekistan, North West and north East of China. More detailed study in the territory of these countries may expand our understanding of the phylogeography of  S. reptans s.l.</p>
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	https://treatment.plazi.org/id/03CD521DFFEF8176FF1B4A50FBF08438	Public Domain	No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.		MagnoliaPress via Plazi	Vaulin, Oleg V.;Petrozhitskaya, Liudmila V.;Novgorodova, Tatiana A.	Vaulin, Oleg V., Petrozhitskaya, Liudmila V., Novgorodova, Tatiana A. (2024): Genetic diversity of populations of Simulium reptans s. l. (Diptera: Simuliidae) in the territory of Russia and Northern Kazakhstan. Zootaxa 5543 (3): 329-342, DOI: 10.11646/zootaxa.5543.3.2, URL: https://doi.org/10.11646/zootaxa.5543.3.2
