Psychrobacter pulmonis WW

Jung, Yong-Taek, Bae, Jin-Woo, Jeon, Che Ok, Joh, Kiseong, Seong, Chi Nam, Jahng, Kwang Yeop, Cho, Jang-Cheon, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung Bum & Yoon, Jung-Hoon, 2016, A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria, Journal of Species Research 5 (1), pp. 188-200 : 198-200

Description of Psychrobacter pulmonis WW 126

Cells are Gram-staining-negative, non-flagellated, and coccoid-shaped. Colonies are opaque, round, smooth, convex, and cream colored after 3 days on R2A at 25℃. Positive for nitrate reduction, but negative for indole production, glucose fermentation, arginine dihydrolase, urease, esculin hydrolysis, gelatinase, and β-galactosidase in API 20NE. Capric acid is utilized. Does not utilize D-glucose, L-arabinose, D-mannose, D-mannitol, N -acetyl-glucosamine, D-maltose, potassium gluconate, malic acid, adipic acid, trisodium citrate, and phenylacetic acid. Strain WW126 (= NIBRBA0000114443) has been isolat- ed from a fresh water, Changnyeong, Korea.

acknowledgeMents

This study was supported by the research grant “The Survey of Korean Indigenous Species” from the National Institute of Biological Resources (NIBR) of the Ministry of Environment in Korea.

references

Andersen, S.M., K. Johnsen, J. Sørensen, P. Nielsen and C.S. Jacobsen, 2000. Pseudomonas frederiksbergensis sp. nov., isolated from soil at a coal gasification site. Int. J. Syst. Evol. Microbiol. 50: 1957-1964.

Brady, C., I. Cleenwerck, S. Venter, T. Coutinho and P.D. Vos. 2013. Taxonomic evaluation of the genus Enterobacter based on multilocus sequence analysis (MLSA): Proposal to reclassify E. nimipressuralis and E. amnigenus into Lelliottia gen. nov. as Lelliottia nimipressuralis comb. nov. and Lelliottia amnigena comb. nov., respectively, E. gergoviae and E. pyrinus into Pluralibacter gen. nov. as Pluralibacter gergoviae comb. nov. and Pluralibacter pyrinus comb. nov., respectively, E. cowanii, E. radicincitans, E. oryzae and E. arachidis into Kosakonia gen. nov. as Kosakonia cowanii comb. nov., Kosakonia radicincitans comb. nov., Kosakonia oryzae comb. nov. and Kosakonia arachidis comb. nov., respectively, and E. turicensis, E. helveticus and E. pulveris into Cronobacter as Cronobacter zurichensis nom. nov., Cronobacter helveticus comb. nov. and Cronobacter pulveris comb. nov., respectively, and emended description of the genera Enterobacter and Cronobacter. Syst. Appl. Microbiol. 36: 309-319.

Cámara, B., G. Strömpl, S. Verbarg, C. Spröer, D.H. Pieper and B.J. Tindall. 2007. Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid. Int. J. Syst. Evol. Microbiol. 57: 923-931.

Carrión, O., D. Miñana-Galbis, M.J. Montes and E. Mercadé. 2011. Pseudomonas deceptionensis sp. nov., a psychrotolerant bacterium from the Antarctic. Int. J. Syst. Evol. Microbiol. 61: 2401-2405.

Catara, V., L. Sutra, A. Morineau, W. Achouak, R. Christen and L. Gardan. 2002. Phenotypic and genomic evidence for the revision of Pseudomonas corrugata and proposal of Pseudomonas mediterranea sp. nov. Int. J. Syst. Evol. Microbiol. 52: 1749-1758.

Chen, W.-M., S.-H. Yang, C.-C. Young and S.-Y. Sheu. 2013. Rheinheimera tilapiae sp. nov., isolated from a freshwater culture pond. Int. J. Syst. Bacteriol. 63: 1457-1463.

Cho, J.C. and S.J. Giovannoni. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70: 432-440.

Christensen, P. and F.D. Cook. 1978. Lysobacter, a new genus of nonfruiting, gliding bacteria with a high base ratio. Int. J. Syst. Bacteriol. 28: 367-393.

Connon, S.A. and S.J. Giovannoni. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68: 3878-3885.

Coroler, L., M. Elomari, B. Hoste, M. Gillis, D. Izard and H. Leclerc. 1996. Pseudomonas rhodesiae sp. nov., a New Species Isolated from Natural Mineral Waters. Syst. Appl. Microbiol. 19: 600-607.

Dabboussi, F., M. Hamze, M. Elomari, S. Verhille, N. Baida, D. Izard and H. Leclerc. 1999. Pseudomonas libanensis sp. nov., a new specie isolated from Lebanese spring waters. Int. J. Syst. Bacteriol. 49: 1091-1101.

Delong, E.F., G.S. Wickham and N.R. Pace. 1989. Phylogenetic stains: Ribosomal RNA-based probes for the identification of single cells. Science 243: 1360-1363.

De La Haba, R.R., C. Sánchez-Porro, M.C. Márquez and A. Ventosa. 2010. Taxonomic study of the genus Salinicola: transfer of Halomonas salaria and Chromohalobacter salarius to the genus Salinicola as Salinicola salarius comb. nov. and Salinicola halophilus nom. nov., respectively. Int. J. Syst. Evol. Microbiol. 60: 963-971.

Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376.

Felsenstein, J. 1993. PHYLIP (phylogeny inference package) version 3.5. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.

Gauthier, M.J., B. Lafay, R. Christen, L. Fernandez, M. Acquaviva, P. Bonin and J.-C. Bertrand. 1992. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a New, Extremely Halotolerant, Hydrocarbon-Degrading Marine Bacterium. Int. J. Syst. Bacteriol. 42: 568-576.

Giovannoni, S.J., T.B. Britschgi, C.L. Moyer and K.G. Field. 1990. Genetic diversity in Sargasso Sea bacterioplankton. Nature 345: 60-63.

Goto, M. 1983. Pseudomonas ficuserectae sp. nov., the Causal Agent of Bacterial Leaf Spot of Ficus erecta Thunb. Int. J. Syst. Bacteriol. 33: 546-550.

Habs, H. and R.H.W. Schubert. 1962. Über die biochemische Merkmale und die taxonomische Stellung von Pseudomonas shigelloides (Bader). Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene. Abteilung I 186: 316-327.

Ivanova, E.P., T. Sawabe, Y.V. Alexeeva, A.M. Lysenko, N.M. Gorshkova, K. Hayashi, N.V. Zukova, R. Christen and V.V. Mikhailov. 2002. Pseudoalteromonas issachenkonii sp. nov., a bacterium that degrades the thallus of the brown alga Fucus evanescens. Int. J. Syst. Evol. Microbiol. 52: 229-234.

Izard, D., F. Gavini, P.A. Trinel and H. Leclerc. 1979. Rahnella aquatilis, nouveau membre de la famille des Enterobacteriaceae. Annal. Microbiol. 130 A: 163-177.

Jukes, T.H. and C.R. Cantor. 1969. Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.

Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62: 716- 721.

Kluge, A.G. and J.S. Farris. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zoology 18: 1-32.

Kushmaro, A., E. Banin, Y. Loya, E. Stachebrandt and E. Rosenberg. 2001. Vibrio shiloi sp. nov., the causative agent of bleaching of the coral Oculina patagonica. Int. J. Syst. Evol. Microbiol. 51: 1383-1388.

Li, H.-J., X.-Y. Zhang, C.-X. Chen, Y.-J. Zhang, Z.-M. Gao, Y. Yu, X.-L. Chen, B. Chen and Y.-Z. Zhang. 2011. Zhongshania antarctica gen. nov., sp. nov. and Zhongshania guokunii sp. nov., gammaproteobacteria respectively isolated from coastal attached (fast) ice and surface seawater of the Antarctic. Int. J. Syst. Evol. Microbiol. 61: 2052-2057.

Macian, M.C., W. Ludwig, R Aznar, P.A. Grimont, K.H. Schleifer, E. Garay and M.J. Pujalte. 2001. Vibrio lentus sp. nov., isolated from Mediterranean oysters. Int. J. Syst. Evol. Microbiol. 51: 1449-1456.

Martín, S., M.C. Márquez, C. Sánchez-Porro, E. Mellado, D.R. Arahal and A. Ventosa. 2003. Marinobacter lipolyticus sp. nov., a novel moderate halophile with lipolytic activity. Int. J. Syst. Evol. Microbiol. 53: 1383-1387.

Monias, B.L. 1928. Classification of Bacterium Alcaligenes, Pyocyaneum and Fluorescens. J. Infec. Diseases 43: 330- 334.

Ørskov, I. 1984. Genus Klebsiella. In: N.R. KRIEG and J.G. HOLT (eds.), Bergey’s Manual of Systematic Bacteriology, first edition, vol. 1, The Williams & Wilkins Co, Baltimore, pp. 461-465.

Parte, A.C. 2014. LPSN-list of prokaryotic names with standing in nomenclature. Nucleic acids research 42 (Database issue):D 613-616.

Palleroni, N.J. and J.F. Bradbury. 1993. Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983. Int. J. Syst. Bacteriol. 43: 606- 609.

Saha, R., C.E. Farrance, B. Verghese, S. Hong and R.S. Donofrio. 2013. Klebsiella michiganensis sp. nov., A New Bacterium Isolated from a Tooth Brush Holder. Curr. Microbiol. 66: 72-78.

Saitou, N. and M. Nei 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.

Staley, J.T., R.L. Irgens and D.J. Brenner. 1987. Enhydrobacter aerosaccus gen. nov., sp. nov., a Gas-Vacuolated, Facultatively Anaerobic, Heterotrophic Rod. Int. J. Syst. Evol. Microbiol. 37: 289-291.

Thompson, J.D., D.G. Higgins and T.J. Gibson. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.

Vanparys, B., K. Heylen, L. Lebbe and P.D. Vos. 2006. Pseudomonas peli sp. nov. and Pseudomonas borbori sp. nov., isolated from a nitrifying inoculum. Int. J. Syst. Evol. Microbiol. 56: 1875-1881.

Vela, A.I., M.D. Collins, M.V. Latre, A. Mateos, M.A. Moreno, R. Hutson, L. Domínguez and J.F. Fernández-Garayzábal. 2003. Psychrobacter pulmonis sp. nov., isolat- ed from the lungs of lambs. Int. J. Syst. Evol. Microbiol. 53: 415-419.

Xie, C.-H. and A. Yokota. 2005. Dyella japonica gen. nov., sp. nov., a γ-proteobacterium isolated from soil. Int. J. Syst. Evol. Microbiol. 55: 753-756.

Xu, X.-W., Y.-H. Wu, C.-S. Wang, J.-Y. Yang, A. Oren and M. Wu. 2008. Marinobacter pelagius sp. nov., a moderately halophilic bacterium. Int. J. Syst. Evol. Microbiol. 58: 637-640.

Yoon, J.-H., S.-J. Kang, S.-Y. Lee, J.-S. Lee and S. Park. 2011. Ohtaekwangia koreensis gen. nov., sp. nov. and Ohtaekwangia kribbensis sp. nov., isolated from marine sand, deep-branching members of the phylum Bacteroidetes. Int. J. Syst. Evol. Microbiol. 61: 1066-1072.

Zhang, C.-X., S.-Y. Yang, M.-X. Xu, J. Sun, H. Liu, J.- R. Liu, H. Liu, F. Kan, J. Sun, R. Lai and K.-Y. Zhang. 2009. Serratia nematodiphila sp. nov., associated symbiotically with the entomopathogenic nematode Heterorhabditidoides chongmingensis (Rhabditida: Rhabditidae). Int. J. Syst. Evol. Microbiol. 59: 1603-1608.

Zhu, B., M.-M. Lou, G.-L. Xie, G.-F. Wang, Q. Zhou, F. Wang, Y. Fang, T. Su, B. Li and Y.-P. Duan. 2011. Enterobacter mori sp. nov., associated with bacterial wilt on Morus alba L. Int. J. Syst. Evol. Microbiol. 61: 2769- 2774.

Submitted: November 12, 2015 Revised: December 8, 2015 Accepted: February 16, 2016